Scientia naturalis et metaphysica
Physics describes measurable structures; metaphysics asks about being and ultimate dependence
Natural science studies mobile and measurable being under experimentally accessible aspects. It identifies regularities, models structures and tests predictions. Metaphysics studies being as being, act and potency, cause, unity, truth and dependence. The two disciplines overlap in their objects but differ formally in the questions they ask. A chemical account of combustion does not replace the metaphysical distinction between actuality and potency; metaphysics does not calculate reaction rates.
Conflict arises when a method is expanded into an ontology without argument. Methodological naturalism can be appropriate within an experiment: the investigator seeks natural causes proportionate to the phenomenon. Metaphysical naturalism adds that only natural entities exist. That conclusion is not an experimental result, because no experiment can survey every mode of being or establish that only what its instruments measure is real.
The God of classical theism is not a hypothesis inserted to compete with a scientific explanation. When science explains a planetary orbit through gravity, it has not made the first cause unnecessary; it has described one created order whose existence, powers and intelligibility still require metaphysical grounding. Conversely, invoking God should never excuse the refusal to investigate proximate causes. Divine causality makes created causality real rather than replacing it.
Quantum physics, cosmology and evolution can refine the empirical premises from which philosophical reflection begins, but they do not repeal first principles. A quantum state is actual in some respect and potential in others; a law-governed probability space is an intelligible structure; an evolving organism possesses powers and ends. The precise metaphysical interpretation of a theory can be disputed, yet the theory is articulated only through the same rational norms that ontology examines.
Reader path: Pius XII, Humani Generis · Aeterni Patris
